function upload(fileInputId, fileIndex)

        {

            // take the file from the input

            var file = document.getElementById(fileInputId).files[fileIndex]; 

            var reader = new FileReader();

            reader.readAsBinaryString(file); // alternatively you can use readAsDataURL

            reader.onloadend  = function(evt)

            {

                    // create XHR instance

                    xhr = new XMLHttpRequest();

                    // send the file through POST

                    xhr.open("POST", 'upload.php', true);

                    // make sure we have the sendAsBinary method on all browsers

                    XMLHttpRequest.prototype.mySendAsBinary = function(text){

                        var data = new ArrayBuffer(text.length);

                        var ui8a = new Uint8Array(data, 0);

                        for (var i = 0; i < text.length; i++) ui8a[i] = (text.charCodeAt(i) & 0xff);

                        var bb = new (window.MozBlobBuilder || window.WebKitBlobBuilder || window.BlobBuilder)(); 

                        bb.append(data);

                        var blob = bb.getBlob();

                        this.send(blob);

                    }

                    // let's track upload progress

                    var eventSource = xhr.upload || xhr;

                    eventSource.addEventListener("progress", function(e) {

                        // get percentage of how much of the current file has been sent

                        var position = e.position || e.loaded;

                        var total = e.totalSize || e.total;

                        var percentage = Math.round((position/total)*100);

                        // here you should write your own code how you wish to proces this

                    });

                    // state change observer - we need to know when and if the file was successfully uploaded

                    xhr.onreadystatechange = function()

                    {

                        if(xhr.readyState == 4)

                        {

                            if(xhr.status == 200)

                            {

                                // process success

                            }else{

                                // process error

                            }

                        }

                    };

                    // start sending

                    xhr.mySendAsBinary(evt.target.result);

            };

        }

After that make a Php file named upload.php having following code

 <?php

// read contents from the input stream

$inputHandler = fopen('php://input', "r");

// create a temp file where to save data from the input stream

$fileHandler = fopen('/tmp/myfile.tmp', "w+");

// save data from the input stream

while(true) {

    $buffer = fgets($inputHandler, 4096);

    if (strlen($buffer) == 0) {

        fclose(inputHandler);

        fclose($fileHandler);

        return true;

    }

    fwrite($fileHandler, $buffer);

}

// done

?>